Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015955010.1_cds_XP_016493694.1_83780
CDS Infomation

[gene=LOC107813009] [db_xref=GeneID:107813009] [protein=pentatricopeptide repeat-containing protein At1g74600, chloroplastic] [protein_id=XP_016493694.1] [location=complement(join(15560..17516,18849..18928))] [gbkey=CDS]
Sequence

ATGGAGCTGGCTATACTTGGCCTGTGGCACAGTAAAGCTGGCTACAGAGCTGACTACGCT
TGGCCTGTTGCTAGGCTTGGATACGTAACCACTCTTTCTCACAAGTGCCAACAGAATAGC
CAACAGCCCACTCTGCCCCTGGACTTTTGCTCCGTGAGCAACTATGATGTTTACTCACTG
AACAGAACATTACGCGACCTTGTCAAGTATGGGTCTTTAACCTCTGCACTCCACCTGTTT
GAAGAAATGCCTAAACGTGATGTGGTTACATGGAATATTATGATTTCTGGATATAGTCAT
TATGGGTTTCCAAGAAAATCAGTGTACTTGTATAATAAAATGGTTTCTCAAGGTATCAGG
GAGAACTCGTCCACTTTGTCCTTTATATTGAGCATATGTGCTAACGCAGGTTTATACAAA
GAAGGGCTTGAGATTTTCAGTAGAGTAGTTGTATTGGGATTTAGTATGAACTTATATATT
GCCAGTGCACTTGTTAATATGTATATACAAATGGGTCTTATAGATGTTGCTTTCAAAGTG
TTTTATGACTTACCAAAACGAAACTTACCTGTATGGAACTTGGTTTTACGTGGAATTAGT
GAAGCGGGTAAGCCCAGTGAGTTCTTAAGATTGTATGGTGATATGAAGTTGGAAAATGTG
GAGCCTAATGGGCTTACAATTTTTTATTTGATTCGAGGTTGTTGTAAAGAGAGACTTCTT
GACAAAGGCAGGGAGATACATTCCCTTGTGATTAAGACGGGGTGGTTAGAATCAAATATC
TTTTTAGCTAATGCATTGGTGGATTTTTACTCTGCTTGTGGCATTTTGGTTGATACAAAT
AAAGCATTTCAGTGTATTCCACCTCAGGATGTTATTTCATGGAATTCAATGGTTTCTATT
TATGCTGCCAAAGATTTGTTGCATGAAGCTGTTCAGGTCCTAGATGAGATGAGATCGTGG
GACAAACACCCATCTGCTATGTCTTTCGTGGCATTGTTGAATTTATCAAGTCGCAAAAAG
GAACTGCTCTTTGGAAAACAAGTGCACAGTTTTGTTATGAAATTGGGCTTTGATTATGGA
AATGTACTCATTCAGTCGGCTTTGATTGATATGTATGGGAAAAATGATGACATAGAAAAT
TCAGTTTCTGTATTCCAGAGCAACCCTATAAGAAGCCTCGAATGTTGTAATTCAATGATG
ACATCTTTGCTGCATCTTGGTGTCCCCCAAGATGTGTTTGAGCTGTTCAGTTGGATGGTT
TGTGAAAATATTACGTTTGATGAAGTGAGTCTGTCCTCAACAATAAAGGCATTATCATTC
TATTCCTCTCCTAGCTTGGATAGCTGTGATTTGTTACATTGCTGTGCAATAAAATCAGGT
TTTGATTTTGATATTATGGTATTATGTTCTCTGATTGATGCGTATTCAAGATCTGGACAG
ATTAGGTACTCTCAGAAGATTTTTGAAGCATTTCCTTCACCTAATATCATCGGTTTCACT
TCAATAATTAATGCATATGCTCGGAAAGGAATGGGAAGTGAATGCCTTGGATTGTTTGAA
GAAATGATCCAGAAGGGTCTAAAACCAGATGAAGTAACATTCTTATGTATACTGTTGGGC
TGCAACCATTCAGGCCTAGTTGAAGAGGGGAAAAAGATTTTTGATTCAATGAGACTTCAT
GGGGTCTTTCCAGACAGGCGGCACTATTCATGTATGGTGGATCTTCTGGGCCGTGCAGGT
CTAGTCATTGAGGCAGAAGAGTTGCTAAACCATGCATCATCGACAGGAGATTCTGTGATG
TGGAGCTCACTTTTACGAAGTTGCAGTATTCATCAAAATGAGCATGTCGGAAGAAGAGCA
GCTAAAAAGTTAATGGATCTTGAGCCAGAGGATCCTTCTGTTTGGTTACAGGCCTCAAAT
TTTTATTCTGAAATTGGGGAGTTCGAGACTGCAATATATATTCGAGAGGTTGCAGTTGCG
AGTAAGATGAGCAGAGATATTGGCTATAGTTTAATTCGGCTCCATGAGTGCCATTAA

Peptide Sequence

PEP ID

XP_016493694.1
PEP Infomation

PREDICTED: pentatricopeptide repeat-containing protein At1g74600, chloroplastic [Nicotiana tabacum]
Sequence

MELAILGLWHSKAGYRADYAWPVARLGYVTTLSHKCQQNSQQPTLPLDFCSVSNYDVYSL
NRTLRDLVKYGSLTSALHLFEEMPKRDVVTWNIMISGYSHYGFPRKSVYLYNKMVSQGIR
ENSSTLSFILSICANAGLYKEGLEIFSRVVVLGFSMNLYIASALVNMYIQMGLIDVAFKV
FYDLPKRNLPVWNLVLRGISEAGKPSEFLRLYGDMKLENVEPNGLTIFYLIRGCCKERLL
DKGREIHSLVIKTGWLESNIFLANALVDFYSACGILVDTNKAFQCIPPQDVISWNSMVSI
YAAKDLLHEAVQVLDEMRSWDKHPSAMSFVALLNLSSRKKELLFGKQVHSFVMKLGFDYG
NVLIQSALIDMYGKNDDIENSVSVFQSNPIRSLECCNSMMTSLLHLGVPQDVFELFSWMV
CENITFDEVSLSSTIKALSFYSSPSLDSCDLLHCCAIKSGFDFDIMVLCSLIDAYSRSGQ
IRYSQKIFEAFPSPNIIGFTSIINAYARKGMGSECLGLFEEMIQKGLKPDEVTFLCILLG
CNHSGLVEEGKKIFDSMRLHGVFPDRRHYSCMVDLLGRAGLVIEAEELLNHASSTGDSVM
WSSLLRSCSIHQNEHVGRRAAKKLMDLEPEDPSVWLQASNFYSEIGEFETAIYIREVAVA
SKMSRDIGYSLIRLHECH

Transcript Sequence

Gene sequence data has not been registered.